Use of Proceeds Modelling
6
Minutes Read
Published
October 3, 2025
Updated
October 3, 2025

Milestone-based hiring models for biotech startups: align hires with funding tranches

Learn how to build a data-driven biotech startup hiring plan template that aligns your team growth and employee costs with critical funding milestones.
Glencoyne Editorial Team
The Glencoyne Editorial Team is composed of former finance operators who have managed multi-million-dollar budgets at high-growth startups, including companies backed by Y Combinator. With experience reporting directly to founders and boards in both the UK and the US, we have led finance functions through fundraising rounds, licensing agreements, and periods of rapid scaling.

The Milestone-Driven Mindset for Biotech Hiring

For a biotech startup, a hiring plan is not an annual HR exercise; it is a direct reflection of the R&D roadmap and a critical variable in cash runway calculations. Unlike software companies that can hire based on revenue growth, biotech hiring is dictated by scientific progress. The core challenge for founders is accurately projecting cash needs when high scientist salaries, significant lab overheads, and uncertain grant receipts are in constant flux. The key is to convert milestone-based investor tranches into a phased hiring schedule that hits R&D deadlines without burning through capital too quickly. It requires building a dynamic biotech hiring forecast that links every role directly to the next value-inflection milestone, ensuring you have the right team at the exact moment you need them, and not a day sooner.

A standard annual hiring plan is fundamentally mismatched with the reality of a pre-seed to Series B biotech. Your progress is not measured in fiscal quarters but in successful experiments, preclinical data packages, and regulatory filings. This is the critical shift... from time-based planning to trigger-based, or milestone-based, planning.

The core unit of planning is... no longer the month or quarter, but the ‘Phase’. A phase is a distinct period of R&D work designed to achieve a specific value-inflection milestone, such as demonstrating in-vivo proof of concept or identifying a lead candidate. These milestones are significant because they de-risk the science and typically unlock the next tranche of funding from investors. Therefore, your startup headcount planning should be structured as a series of lean, purpose-built teams, each assembled to conquer a single phase. This approach rejects ‘wishlist’ hiring... in favor of defining the absolute essential, ‘go/no-go’ team required to get to the next funding event. It ensures every dollar spent on headcount is directly tied to creating tangible, fundable value.

Step 1: Map Your Science to Funding Milestones

The first step in creating a resilient biotech team growth plan is to translate your scientific roadmap into a sequence of financially distinct phases. This process connects your R&D objectives directly to your funding strategy and can be managed effectively in a simple spreadsheet. For most early-stage biotechs, funding is not a single lump sum but a series of infusions tied to tangible progress.

Start by listing your major scientific milestones for the next 18 to 24 months. Then, group the activities required to achieve each milestone into a distinct Phase. Finally, align these phases with your current and anticipated funding tranches. This structure forces you to articulate precisely what scientific result unlocks the next check, creating the foundational map for your employee cost modeling.

Consider this example structure for your model:

  • Phase 1: In-vitro Proof of Concept (PoC). This phase focuses on initial discovery and validation.
    • R&D Activities: Target validation, assay development.
    • Key Milestone (Value Inflection Point): Successful in-vitro Proof of Concept.
    • Funding Source: Seed Round ($2M).
    • Estimated Duration: 6-9 Months.
  • Phase 2: Lead Candidate Identification. The focus shifts from broad discovery to optimizing a specific molecule.
    • R&D Activities: Lead optimization, initial toxicology screening.
    • Key Milestone (Value Inflection Point): Identification of a viable Lead Candidate.
    • Funding Source: Series A - Tranche 1 ($5M).
    • Estimated Duration: 9-12 Months.
  • Phase 3: In-vivo Efficacy. This phase involves testing the candidate in a living organism to prove its potential.
    • R&D Activities: In-vivo Proof of Concept studies, early Chemistry, Manufacturing, and Controls (CMC) planning.
    • Key Milestone (Value Inflection Point): Successful in-vivo efficacy data package.
    • Funding Source: Series A - Tranche 2 ($7M).
    • Estimated Duration: 12-15 Months.

Step 2: Define the 'Go/No-Go' Team for Each Phase

With your phases mapped, the next question is: who do you absolutely need to hire to complete each one? This step in your workforce planning for startups is about ruthless prioritization, separating the core team from variable support. Your core team consists of the full-time employees (FTEs) essential for the proprietary science and daily operations. Variable support, such as Contract Research Organizations (CROs) or specialist consultants, should be used for non-core, standardized, or capital-intensive activities that do not yet require a full-time hire.

The goal is to define... the minimum viable team for each phase, keeping fixed costs low for as long as possible. You are not hiring for a hypothetical future; you are hiring for the specific expertise needed to complete the current phase and unlock the next round of funding.

  • Phase 1 Team (In-vitro PoC): The ‘go/no-go’ team might be one Principal Scientist (PhD) to lead experimental design and one Research Associate (BS/MS) to execute bench work. The founding CSO provides oversight. You do not need a Head of CMC or a regulatory specialist yet.
  • Phase 2 Team (Lead Candidate ID): You will likely retain the Phase 1 team and add a Computational Chemist to model candidates and accelerate optimization. At this stage, specialized chemical synthesis is often outsourced to a CRO to avoid the high capital expenditure of building an internal chemistry lab.
  • Phase 3 Team (In-vivo Efficacy): The team expands to include a specialist in in-vivo models or a pharmacologist. You might also bring on a part-time consultant for early regulatory strategy to ensure your data package aligns with future submission requirements.

Step 3: Create an Employee Cost Modeling Template

Answering “how much does a new hire really cost?” is a common stumbling block. A base salary is only part of the story; the fully-loaded cost is the true number that impacts your cash runway. To avoid costly miscalculations, your budgeting for new hires must be comprehensive and data-driven.

In practice, we see that... the formula for a fully-loaded cost includes several components: Base Salary + Payroll Taxes + Benefits + Per-Head Overhead. While the first three are standard, the overhead is uniquely critical in biotech. Lab overhead per scientist can add $25,000 to $50,000 or more per year to a role's cost, covering shared lab supplies, equipment depreciation, software licenses, and facilities. This number must be factored into your biotech hiring forecast.

Sourcing reliable salary data is crucial for accuracy. Key data sources include Radford, Option Impact, survey data from industry groups (e.g., BIO), and VC portfolio data. Your venture capital investors can often provide anonymized compensation data from their other portfolio companies, which is highly valuable. Remember to account for geographic differences. A Senior Scientist role in Boston or the San Francisco Bay Area will have a significantly higher salary than one in a different biotech hub. In your model, also differentiate between US payroll tax assumptions (typically 10-15% for FICA, FUTA, SUTA) and UK rules, where you must account for employer National Insurance contributions.

Example: Fully-Loaded Cost for a Principal Scientist (Boston)

  • Base Salary: $160,000 (Based on survey data)
  • Payroll Taxes (12%): $19,200
  • Benefits (Health, Dental, 401k at 20%): $32,000
  • Lab & Software Overhead: $45,000
  • Total Annual Fully-Loaded Cost: $256,200

Your spreadsheet model should break this down for every potential hire. A robust template includes columns for Role Title, Target Phase, Planned Start Trigger, Base Salary, Payroll Tax Percentage, Benefits Percentage, Lab Overhead, and the resulting Monthly Fully-Loaded Cost. This detail is what allows you to accurately model your burn rate as you scale the team.

Step 4: Build a Dynamic Model and Run Scenarios

Your biotech startup hiring plan spreadsheet should not be a static document. Its power comes from its ability... to model different scenarios, making it a flexible tool for managing scientific and financial uncertainty. The two most important scenarios to model are your Base Case and your Worst Case.

What founders find actually works is... to build the initial plan based on an optimistic R&D timeline, then immediately create versions that account for delays. For your Base Case, a good rule of thumb is to build in a timeline buffer of 20-30%. If you believe Phase 1 will take nine months, model it as 11 or 12 months. This simple adjustment immediately shows you the impact on your runway and may change when you decide to trigger the next hire.

For the Worst Case, model specific, plausible setbacks. This is not about being pessimistic; it is about being prepared and understanding your financial guardrails. Your scenario planning should model potential delays, such as a three-month delay in receiving a key grant or a six-month delay caused by a critical experiment needing to be repeated.

Mini-Case Study: The Hidden Runway Risk

A scenario we repeatedly see is... an early-stage therapeutics company planning to hire two more scientists in Month 7, based on a grant application submitted in Month 2. Their optimistic plan shows 12 months of runway remaining.

  • Base Case Model: They apply a 20% delay, assuming the grant funds arrive in Month 9, not Month 7. The model correctly pushes the hiring start dates to Month 10. Their runway is now 9 months from the new hire date, which is still acceptable.
  • Worst Case Model: They model a three-month delay in the grant award, with funds arriving in Month 10. Critically, the experiment that depends on the new hires cannot start until they are on board. The model reveals that if this experiment then takes six months to complete, they will run out of cash just one month before hitting the milestone needed for their next funding round.

The lesson is clear: the hiring trigger should not be a date on the calendar. It must be tied to an event, primarily the receipt of funding or the achievement of a key scientific result. Your model makes these dependencies explicit, preventing catastrophic miscalculations.

Building a Resilient Biotech Hiring Plan

To build a durable funding milestone staffing model, focus on these core principles. They transform your plan from a static document into a strategic tool for navigating the inherent uncertainty of biotech R&D.

  • Plan in Phases, Not Years: Structure your entire hiring plan around the scientific milestones that unlock your next funding tranche. Each phase gets a dedicated, minimal team.
  • Define the 'Go/No-Go' Team: For each phase, be disciplined about identifying the absolute essential hires versus work that can be outsourced to CROs or consultants to manage fixed costs.
  • Calculate Fully-Loaded Costs: Never use base salary alone for planning. Always include payroll taxes, benefits, and especially the significant lab and software overhead per scientist.
  • Model Scenarios: Your plan is a dynamic tool. Build a base case with a 20-30% timeline buffer and a worst case that models specific funding or R&D delays.
  • Use Triggers, Not Dates: Link hiring decisions to events, like 'cash in bank' from a new funding round or 'successful completion of experiment X', not to a fixed point in time.

This isn't just an academic exercise... for your board deck. Start building this simple, phase-based spreadsheet model today. It will become your most critical tool for managing cash, communicating with investors, and making disciplined decisions that ensure you have enough runway to reach your next breakthrough. Continue at the Use of Proceeds hub for related models.

Frequently Asked Questions

Q: How early should a biotech startup create this type of hiring plan?
A: You should build the first version of your milestone-based hiring plan as part of your seed round fundraising. It is a core component of your use of proceeds model and demonstrates to investors that you have a disciplined, capital-efficient plan for achieving your next value inflection point.

Q: What is the biggest mistake founders make in their first biotech hiring forecast?
A: The most common and costly mistake is underestimating the fully-loaded cost of an employee. Founders often budget using only base salary, forgetting to include payroll taxes, benefits, and critical lab overhead. This miscalculation can easily shorten a startup's cash runway by 25-40%.

Q: How do you handle equity compensation in this employee cost model?
A: While equity is a crucial part of compensation, it is a non-cash expense and is typically managed separately from the cash-based hiring plan that determines your burn rate. Model your equity pool and allocation in a separate capitalization table (cap table), but focus this hiring model exclusively on cash outflows.

Q: Should I use a PEO or handle payroll in-house for the first few hires?
A: For most early-stage startups in the US and UK, using a Professional Employer Organization (PEO) is highly recommended. A PEO handles payroll, benefits, and compliance, allowing the founding team to focus on the science. It also provides access to better, more affordable benefits than a small startup could secure on its own.

This content shares general information to help you think through finance topics. It isn’t accounting or tax advice and it doesn’t take your circumstances into account. Please speak to a professional adviser before acting. While we aim to be accurate, Glencoyne isn’t responsible for decisions made based on this material.

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