Benefits Accounting & Accruals
6
Minutes Read
Published
August 14, 2025
Updated
August 14, 2025

FMLA and State Leave: How Startups Track Accruals and Record Liabilities

Learn how to track state family leave accruals for startups to ensure payroll compliance across multiple states and manage employee benefits correctly.
Glencoyne Editorial Team
The Glencoyne Editorial Team is composed of former finance operators who have managed multi-million-dollar budgets at high-growth startups, including companies backed by Y Combinator. With experience reporting directly to founders and boards in both the UK and the US, we have led finance functions through fundraising rounds, licensing agreements, and periods of rapid scaling.

FMLA and State Leave: US Accrual Complexity Explained

Your first remote hire in Colorado was a major win for talent acquisition, but now a notice about FAMLI premiums has landed on your desk. For scaling US startups, this scenario is becoming the norm. As your team expands from a single office to a distributed workforce across several states, you quickly discover that employee leave isn't a simple, one-size-fits-all policy. The complexity isn't theoretical; it creates real administrative burdens and financial risks that founders and operations leads, already stretched thin, must manage.

This transition from a simple local team to a multi-state operation is where straightforward HR tasks become a tangled web of compliance, accounting, and employee relations. Ignoring this complexity can lead to misstated financials during fundraising and compliance penalties that a growing business cannot afford. Understanding and managing this system is crucial for sustainable growth.

Foundational Understanding: The Two-Layer System of US Employee Leave

To understand why US employee leave is so complicated, you must recognize its two-layer structure: a federal floor and a state-level patchwork. At the base is federal law, primarily the Family and Medical Leave Act (FMLA). FMLA is a federal law providing job protection for eligible employees for specified family and medical reasons. However, its scope is specific and often doesn't apply to early-stage companies.

The FMLA threshold is 50 or more employees within a 75-mile radius, meaning many startups are exempt. Crucially, FMLA does not mandate paid leave; it only secures an employee's job upon their return. This is a critical distinction: FMLA is about job security, not wage replacement. For employees at smaller companies or those needing financial support during leave, FMLA offers no direct help.

The real complexity for growing companies arises from the second layer: a rapidly expanding patchwork of state laws. These state-mandated programs are designed to provide paid leave benefits, filling the gap left by the unpaid nature of FMLA. State leave laws often apply to much smaller companies than the FMLA threshold, sometimes starting with the very first employee. Example states with their own paid leave programs include California, New York, Massachusetts, Washington, and Colorado.

These programs have unique rules for eligibility, accrual rates, contribution requirements, and benefit amounts, creating significant challenges for managing multi-state employee benefits. A prime example is Colorado's FAMLI program, which began collecting premiums in 2023 and started offering benefits in 2024, catching many newly remote-friendly companies off guard. Each new state you hire in adds another layer of rules to manage.

How to Track State Family Leave Accruals for Startups: The First Headache

For a founder or operations lead at a SaaS or Biotech startup, the immediate challenge is tracking these disparate state leave accrual rules. When your team was five people in one office, a simple spreadsheet might have worked. But with 25 employees across California, New York, and Colorado, that system breaks. Each state has its own set of regulations governing how much leave an employee earns and when they can use it. This is the first major pain point for a distributed workforce: ensuring each employee accrues the correct entitlement based on their location.

While PEOs and HRIS platforms like Gusto or Rippling are essential tools, they are not a fully automated solution. The reality for most startups is more pragmatic: these systems require careful configuration. You must input the correct state-specific policies for them to function properly. The system doesn't automatically know your company’s specific policies or how to interpret nuanced state leave accrual rules without your input. This manual setup creates a significant risk of error, especially when laws change, which they frequently do.

The core challenge becomes **how to track state family leave accruals for startups** without a dedicated HR manager to monitor legislative updates across multiple jurisdictions. A scenario we repeatedly see is a company discovering during an internal audit that they’ve been miscalculating accruals for their out-of-state employees for months, creating a sudden compliance fire. This requires retroactive corrections to both payroll and your financial statements.

This operational headache grows with your headcount. At 1 to 10 employees, it's manageable. From 11 to 49, the complexity multiplies with each new state you hire in. By the time you cross the 50-employee threshold for FMLA, you are already juggling a complex matrix of state paid leave programs, each with its own tracking paid family leave and compliance demands. Effective tracking is no longer a simple administrative task but a critical compliance function.

From Tracking to Your Books: The Leave Liability Problem

Once you’ve wrestled with tracking accruals, the next challenge is translating that data into accurate financial statements. This is the second major pain point: moving from HR tracking to precise payroll and general-ledger entries to avoid misstated liabilities. This isn't just an accounting exercise; it has real implications for audits and fundraising due diligence.

Under US GAAP, you must record a liability for compensated absences. A leave liability is the value of paid time off that employees have earned but not yet used, recorded as a debt on the balance sheet. It represents a real financial obligation your company owes to its employees. Investors and auditors will scrutinize your balance sheet, and a misstated or missing liability for accrued leave is a red flag. It suggests a lack of financial control and can complicate a deal or trigger a more painful audit.

Calculating this liability is straightforward in theory but relies entirely on accurate tracking. The formula for calculating leave liability is: (Total accrued leave hours) x (Average hourly wage). Let’s walk through a synthetic example. Consider a 30-person Deeptech startup with employees in several states. They use QuickBooks for their accounting.

  1. Pull the Data: The operations lead runs a report from their HRIS showing a total of 600 accrued but unused paid leave hours across the entire company.
  2. Calculate Average Wage: They determine the company's average hourly wage is $65.
  3. Apply the Formula: (600 hours) x ($65/hour) = $39,000.

This $39,000 is a liability that must be recorded on the balance sheet. In QuickBooks, this typically involves a journal entry that debits a Leave Expense account and credits a separate Accrued Leave Liability account. For founders focused on runway, recognizing this liability is crucial for accurate cash flow forecasting. It’s a real debt that will eventually be paid out, impacting your cash position.

For more on the accounting treatment and practice around compensated absences, see guidance on accrued leave under ASC 710. This resource summarises key points to consider when estimating liabilities.

Running the Playbook: Managing Family Leave Payroll Compliance

Theory and tracking are one thing, but managing an employee’s actual leave request is where processes are truly tested. This is the third major pain point: executing the required notices, documentation, and payroll adjustments without a dedicated HR department. An improperly managed leave can lead to compliance fines and, just as importantly, damage employee trust and morale.

For the operations lead at an e-commerce or professional services firm, handling this process requires a clear, repeatable playbook. The key is to coordinate between the employee, their manager, your payroll system, and any state-level agencies. Your PEO or HRIS can help manage notifications, but the ultimate responsibility for ensuring everything is handled correctly rests with the company. A well-defined leave policy for startups is the foundation of this process, setting clear expectations for everyone involved.

Consider this checklist as a practical guide for managing a request:

  • Step 1: Initial Intake & Eligibility Check: Once an employee submits a request, confirm their eligibility under federal (FMLA, if applicable) and relevant state laws. Check their tenure and hours worked against the legal requirements in their state of employment.
  • Step 2: Provide Required Notices: Both FMLA and many state laws require employers to provide specific notices to the employee within a set timeframe, typically a few business days. These forms outline their rights, responsibilities, and benefit details.
  • Step 3: Collect Documentation: Request and securely store any required certification, such as a note from a healthcare provider. Be mindful of privacy regulations like HIPAA when handling sensitive medical information.
  • Step 4: Coordinate with Payroll: This is a critical step for family leave payroll compliance. Adjust settings in your payroll systems for leave management. Inform your payroll provider or update your QuickBooks settings to ensure the employee is paid correctly from any company-provided paid leave. Critically, you must coordinate any payments from state-run insurance programs with your company's own payroll to avoid overpayment and ensure contributions are handled correctly.
  • Step 5: Plan for Coverage: Work with the employee’s manager to create a clear plan for covering their responsibilities during their absence. This ensures business continuity and reduces stress for the team.
  • Step 6: Manage Return to Work: Before the employee's return, confirm their return date and plan for a smooth transition back into their role. Ensure their payroll and benefits are reinstated correctly in all systems from their first day back.

Following a structured process like this demystifies leave management and reduces the risk of costly errors. It transforms a potentially chaotic event into a predictable, manageable workflow.

Practical Takeaways: Your Leave Management Roadmap

Navigating the complexities of FMLA and state leave doesn't require a massive HR team from day one. It requires a proactive and structured approach. For founders and ops leads at scaling companies, the goal is to build a system that can handle today’s needs while being flexible enough to grow with you.

Here is a practical roadmap to get your leave management in order:

  1. Conduct a Workforce Audit: Your first step is to know where your employees are. Maintain an up-to-date record of each employee's primary work location, as this single data point determines which state laws apply to them. This should be reviewed at least quarterly.
  2. Configure Your Tools Intelligently: Treat your PEO or HRIS as a powerful tool that needs proper direction. Schedule a quarterly review with an HR expert or your provider to ensure your leave policies are correctly configured for each state where you have employees. This is foundational to how to track state family leave accruals for startups accurately.
  3. Establish a Financial Process: Work with your accountant to create a standardized monthly or quarterly journal entry in QuickBooks to record your leave liability. Automating this process as part of your month-end close ensures your financial statements remain accurate and you are always prepared for investor due diligence.
  4. Document Your Leave Playbook: Create a simple internal guide based on the checklist in the previous section. Having a documented process for handling leave requests ensures consistency, fairness, and compliance. It empowers anyone on your operations team to manage the process correctly, even if it’s their first time.

By taking these concrete steps, you can transform leave management from a source of anxiety and risk into a well-oiled operational function. This proactive stance on compliance and financial hygiene is a hallmark of a well-run, scalable startup. For related guidance, see our Benefits Accounting hub.

Frequently Asked Questions

Q: Do FMLA rules apply to remote employees?

A: Yes, but with a key nuance. To be eligible, a remote employee must work for a company with 50 or more employees within a 75-mile radius of their worksite. For remote workers, the "worksite" is typically the office they report to or receive assignments from, not their home address. This can make many remote employees at distributed companies ineligible for FMLA.

Q: Can we create one PTO policy for all US employees to simplify things?

A: While you can have a single overarching policy, it must meet the minimum requirements of every state where you employ someone. This "highest common denominator" approach can be costly and complex. More often, companies create a baseline policy and then state-specific addendums to ensure compliance without offering unnecessarily generous benefits everywhere.

Q: What is the main difference between a PEO and an HRIS for leave management?

A: An HRIS (like Rippling) is a software platform that you configure and manage. A PEO (like Justworks) acts as a co-employer, taking on more direct responsibility for payroll and compliance. While a PEO may offer more hands-on support, you are still ultimately responsible for providing them with the correct information about your specific leave policies and employee locations.

This content shares general information to help you think through finance topics. It isn’t accounting or tax advice and it doesn’t take your circumstances into account. Please speak to a professional adviser before acting. While we aim to be accurate, Glencoyne isn’t responsible for decisions made based on this material.

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